Description
Image Processing Activities:1. Softwares: HALO indica Lab, ImageJ FIJI, and Quepath.
2. IHC DAB Scoring, High-plex Imf images processing, and, Cell Segmentation (Stardist, python),
3. Image segmentation (U-net, pytorch),
4. Proximity/nearest neighborhood analysis (using python),
5. Single cell data extraction,
6. Nano string GeoMx ROI segmentation.
Projects:
1. Systems Modeling of Tumor Heterogeneity and Therapy Response in Colorectal Cancer
The National Cancer Institute of the National Institutes of Health under award number R01CA208179.
Collaboration - General Electrics Healthcare, NY and Memorial Sloan Kattering Hospital, NY.
Period | 30 Jul 2024 → 30 Jul 2025 |
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Visiting | Royal College of Surgeons in Ireland |
Degree of Recognition | International |
Field of Science
- 1.2 Computer and information sciences
- 2.6 Medical engineering
Related content
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Publications
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Spatial effects of infiltrating T cells on neighbouring cancer cells and prognosis in stage III CRC patients
Research output: Contribution to journal › Article › peer-review
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Spatial transcriptomic analysis reveals local effects of intratumoral fusobacterial infection on DNA damage and immune signaling in rectal cancer
Research output: Contribution to journal › Article › peer-review
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Integrated multiplex analysis of cell death regulators in stage II colorectal cancer suggests patients with ‘persister’ cell profiles fail to benefit from adjuvant chemotherapy
Research output: Contribution to journal › Article › peer-review