TY - GEN
T1 - Connectivity analysis of metabolites in synthetic metabolic pathways
AU - Meitalovs, Jurijs
AU - Stalidzans, Egils
PY - 2013
Y1 - 2013
N2 - The size and number of available genome scale metabolic models and reconstructions is growing rapidly. Various computational methods and tools are developed in the last decades for metabolic network construction, analysis and optimization. A software tool SpaceAnalyzer (SAnalyzer) is developed in Matlab environment for automatic generation of biochemical pathways to new metabolites. The computational experiments were performed to build automatically the connectivity tree for 2,3-Butanediol, n-Butanol, caprolactam, lactose, penicillin and cellulose as substrates. The software tool is freely available online at: http://www.biosystems.lv/sanalyzer.
AB - The size and number of available genome scale metabolic models and reconstructions is growing rapidly. Various computational methods and tools are developed in the last decades for metabolic network construction, analysis and optimization. A software tool SpaceAnalyzer (SAnalyzer) is developed in Matlab environment for automatic generation of biochemical pathways to new metabolites. The computational experiments were performed to build automatically the connectivity tree for 2,3-Butanediol, n-Butanol, caprolactam, lactose, penicillin and cellulose as substrates. The software tool is freely available online at: http://www.biosystems.lv/sanalyzer.
KW - Metabolic pathway construction
KW - Metabolism
KW - Solution space
KW - Synthetic biology
UR - http://www.scopus.com/inward/record.url?scp=84887075912&partnerID=8YFLogxK
M3 - Conference contribution
AN - SCOPUS:84887075912
VL - 12
T3 - Engineering for Rural Development
SP - 435
EP - 440
BT - 12th International Scientific Conference ENGINEERING FOR RURAL DEVELOPMENT
PB - Latvia University of Agriculture
CY - Jelgava
T2 - 12th International Scientific Conference on Engineering for Rural Development 2013
Y2 - 23 May 2013 through 24 May 2013
ER -