Connectivity analysis of metabolites in synthetic metabolic pathways

Jurijs Meitalovs; Egils Stalidzans

Connectivity analysis of metabolites in synthetic metabolic pathways

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Citation (Scopus)

Abstract

The size and number of available genome scale metabolic models and reconstructions is growing rapidly. Various computational methods and tools are developed in the last decades for metabolic network construction, analysis and optimization. A software tool SpaceAnalyzer (SAnalyzer) is developed in Matlab environment for automatic generation of biochemical pathways to new metabolites. The computational experiments were performed to build automatically the connectivity tree for 2,3-Butanediol, n-Butanol, caprolactam, lactose, penicillin and cellulose as substrates. The software tool is freely available online at: http://www.biosystems.lv/sanalyzer.

Original language	English
Title of host publication	12th International Scientific Conference ENGINEERING FOR RURAL DEVELOPMENT
Subtitle of host publication	Proceedings
Place of Publication	Jelgava
Publisher	Latvia University of Agriculture
Pages	435-440
Number of pages	6
Volume	12
Publication status	Published - 2013
Externally published	Yes
Event	12th International Scientific Conference on Engineering for Rural Development - Jelgava, Latvia Duration: 23 May 2013 → 24 May 2013 Conference number: 12 https://www.iitf.lbtu.lv/conference/proceedings2013/Papers/Title_Contents.pdf

Publication series

Name	Engineering for Rural Development
Publisher	Latvia University of Life Sciences and Technologies
ISSN (Print)	1691-3043

Conference

Conference	12th International Scientific Conference on Engineering for Rural Development
Country/Territory	Latvia
City	Jelgava
Period	23/05/13 → 24/05/13
Internet address	https://www.iitf.lbtu.lv/conference/proceedings2013/Papers/Title_Contents.pdf

Keywords*

Metabolic pathway construction
Metabolism
Solution space
Synthetic biology

Field of Science*

4.1 Agriculture, Forestry, and Fisheries
2.8 Environmental biotechnology
2.2 Electrical engineering, Electronic engineering, Information engineering
2.11 Other engineering and technologies

Publication Type*

3.1. Articles or chapters in proceedings/scientific books indexed in Web of Science and/or Scopus database

Cite this

@inproceedings{92d3b7b8245a42ea86537bb00c12a7cd,

title = "Connectivity analysis of metabolites in synthetic metabolic pathways",

abstract = "The size and number of available genome scale metabolic models and reconstructions is growing rapidly. Various computational methods and tools are developed in the last decades for metabolic network construction, analysis and optimization. A software tool SpaceAnalyzer (SAnalyzer) is developed in Matlab environment for automatic generation of biochemical pathways to new metabolites. The computational experiments were performed to build automatically the connectivity tree for 2,3-Butanediol, n-Butanol, caprolactam, lactose, penicillin and cellulose as substrates. The software tool is freely available online at: http://www.biosystems.lv/sanalyzer.",

keywords = "Metabolic pathway construction, Metabolism, Solution space, Synthetic biology",

author = "Jurijs Meitalovs and Egils Stalidzans",

year = "2013",

language = "English",

volume = "12",

series = "Engineering for Rural Development",

publisher = "Latvia University of Agriculture",

pages = "435--440",

booktitle = "12th International Scientific Conference ENGINEERING FOR RURAL DEVELOPMENT",

note = "12th International Scientific Conference on Engineering for Rural Development ; Conference date: 23-05-2013 Through 24-05-2013",

url = "https://www.iitf.lbtu.lv/conference/proceedings2013/Papers/Title_Contents.pdf",

}

Meitalovs, J & Stalidzans, E 2013, Connectivity analysis of metabolites in synthetic metabolic pathways. in 12th International Scientific Conference ENGINEERING FOR RURAL DEVELOPMENT: Proceedings. vol. 12, Engineering for Rural Development, Latvia University of Agriculture, Jelgava , pp. 435-440, 12th International Scientific Conference on Engineering for Rural Development , Jelgava, Latvia, 23/05/13.

Connectivity analysis of metabolites in synthetic metabolic pathways. / Meitalovs, Jurijs; Stalidzans, Egils.
12th International Scientific Conference ENGINEERING FOR RURAL DEVELOPMENT: Proceedings. Vol. 12 Jelgava : Latvia University of Agriculture, 2013. p. 435-440 (Engineering for Rural Development).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

TY - GEN

T1 - Connectivity analysis of metabolites in synthetic metabolic pathways

AU - Meitalovs, Jurijs

AU - Stalidzans, Egils

N1 - Conference code: 12

PY - 2013

Y1 - 2013

N2 - The size and number of available genome scale metabolic models and reconstructions is growing rapidly. Various computational methods and tools are developed in the last decades for metabolic network construction, analysis and optimization. A software tool SpaceAnalyzer (SAnalyzer) is developed in Matlab environment for automatic generation of biochemical pathways to new metabolites. The computational experiments were performed to build automatically the connectivity tree for 2,3-Butanediol, n-Butanol, caprolactam, lactose, penicillin and cellulose as substrates. The software tool is freely available online at: http://www.biosystems.lv/sanalyzer.

AB - The size and number of available genome scale metabolic models and reconstructions is growing rapidly. Various computational methods and tools are developed in the last decades for metabolic network construction, analysis and optimization. A software tool SpaceAnalyzer (SAnalyzer) is developed in Matlab environment for automatic generation of biochemical pathways to new metabolites. The computational experiments were performed to build automatically the connectivity tree for 2,3-Butanediol, n-Butanol, caprolactam, lactose, penicillin and cellulose as substrates. The software tool is freely available online at: http://www.biosystems.lv/sanalyzer.

KW - Metabolic pathway construction

KW - Metabolism

KW - Solution space

KW - Synthetic biology

UR - http://www.scopus.com/inward/record.url?scp=84887075912&partnerID=8YFLogxK

M3 - Conference contribution

AN - SCOPUS:84887075912

VL - 12

T3 - Engineering for Rural Development

SP - 435

EP - 440

BT - 12th International Scientific Conference ENGINEERING FOR RURAL DEVELOPMENT

PB - Latvia University of Agriculture

CY - Jelgava

T2 - 12th International Scientific Conference on Engineering for Rural Development

Y2 - 23 May 2013 through 24 May 2013

ER -

Connectivity analysis of metabolites in synthetic metabolic pathways

Abstract

Publication series

Conference

Keywords*

Field of Science*

Publication Type*

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Cite this